nf-core/mashtree @ 0.0.0-0c7146d
Summary
Quickly create a tree using Mash distances
Get started
Add the following snippet to your workflow script to include this module.
include { MASHTREE } from 'nf-core/mashtree'
License
MIT License
Process
Name
|
MASHTREE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
seqs
file
|
FASTA, FASTQ, GenBank, or Mash sketch files *.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}
|
Output
3 channels
#1
tree
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.dnd
file
|
A Newick formatted tree file *.{dnd}
|
#2
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
A TSV matrix of pair-wise Mash distances *.{tsv}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mashtree | Create a tree using Mash distances | https://github.com/lskatz/mashtree |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:54:10 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmashtree/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mashtree/blobs/sha256:9660a14a9a4ac0702b86c9353358d553c4fa598c7b7e0f74751afd58167d2715 |
| Size | 2.4 KB |
| Checksum | sha256:9660a14a9a4ac0702b86c9353358d553c4fa598c7b7e0f74751afd58167d2715 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:54:10 (UTC) | 1 | 2.4 KB | - |