Nextflow Registry | nf-core/mash/screen@0.0.0-0c7146d

nf-core/mash/screen @ 0.0.0-0c7146d

Screens query sequences against large sequence databases

screen containment contamination taxonomic assignment

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mahesh-panchal

Maintainers: @mahesh-panchal

Screens query sequences against large sequence databases

Add the following snippet to your workflow script to include this module.

include { MASH_SCREEN } from 'nf-core/mash/screen'

MIT License

Process

`Name`	`MASH_SCREEN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`query` file	Query sequences `*.fastq.gz`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`sequences_sketch` file	sketch file of sequences

Output 2 channels

#1 screen tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.screen` file	List of sequences from fastx_db similar to query sequences `*.screen`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
mash	Fast sequence distance estimator that uses MinHash	https://github.com/marbl/Mash

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:05 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmash%2Fscreen/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mash/screen/blobs/sha256:b47dedd98e50d703f733cf6345ea4ef89a400a7f794658040e624e800e9026a9
Size	2.3 KB
Checksum	sha256:b47dedd98e50d703f733cf6345ea4ef89a400a7f794658040e624e800e9026a9
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:05 (UTC)		1	2.3 KB	-