nf-core/localcdsearch/download @ 0.0.0-0c7146d
Summary
A command-line tool for downloading databases for local protein domain annotation using NCBI's Conserved Domain Database (CDD)
Get started
Add the following snippet to your workflow script to include this module.
include { LOCALCDSEARCH_DOWNLOAD } from 'nf-core/localcdsearch/download'
License
MIT License
Process
Name
|
LOCALCDSEARCH_DOWNLOAD |
|---|
Input
1 channel
databases
list
|
List of database names to download. Can be a single database name or multiple names. Valid options: cdd, cdd_ncbi, cog, kog, pfam, prk, smart, tigr cdd|cdd_ncbi|cog|kog|pfam|prk|smart|tigr
|
|---|
Output
2 channels
#1
db
database/
directory
|
Directory containing downloaded CDD databases |
|---|
#2
versions_localcdsearch
tuple
${task.process}
string
|
The name of the process |
|---|---|
local-cd-search
string
|
The name of the tool |
0.3.0
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| localcdsearch | Protein annotation using local PSSM databases from CDD. | https://github.com/apcamargo/local-cd-search |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:52:20 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Flocalcdsearch%2Fdownload/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/localcdsearch/download/blobs/sha256:e71a4fd5f4f59a5d48dbb377c3d93e009c6b1d4cf7c8185acc314116848752fc |
| Size | 3.4 KB |
| Checksum | sha256:e71a4fd5f4f59a5d48dbb377c3d93e009c6b1d4cf7c8185acc314116848752fc |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:52:20 (UTC) | 1 | 3.4 KB | - |