Nextflow Registry | nf-core/leehom@0.0.0-0c7146d

nf-core/leehom @ 0.0.0-0c7146d

Bayesian reconstruction of ancient DNA fragments

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Bayesian reconstruction of ancient DNA fragments

Add the following snippet to your workflow script to include this module.

include { LEEHOM } from 'nf-core/leehom'

MIT License

Process

`Name`	`LEEHOM`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	Unaligned BAM or one or two gzipped FASTQ file(s) `*.{bam,fq.gz,fastq.gz}`

Output 9 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.bam` file	BAM file `*.bam`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.log` file	Log file of command `*.log`

#3 fq_fail tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.fail.fq.gz` file	Failed trimmed and merged FASTQs `*.fail.fq.gz`

#4 fq_pass tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.fq.gz` file	Trimmed and merged FASTQ `*.fq.gz`

#5 versions

`versions.yml` file	File containing software versions `versions.yml`

#6 unmerged_r1_fq_fail tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}_r1.fail.fq.gz` file	Failed unmerged R1 FASTQs `*.r1.fail.fq.gz`

#7 unmerged_r1_fq_pass tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}_r1.fq.gz` file	Passed unmerged R1 FASTQs `*.r1.fq.gz`

#8 unmerged_r2_fq_fail tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}_r2.fail.fq.gz` file	Failed unmerged R2 FASTQs `*.r2.fail.fq.gz`

#9 unmerged_r2_fq_pass tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}_r2.fq.gz` file	Passed unmerged R2 FASTQs `*.r2.fq.gz`

Tool	Description	Homepage
leehom	Bayesian reconstruction of ancient DNA fragments	https://grenaud.github.io/leeHom/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:52:01 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fleehom/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/leehom/blobs/sha256:8e802d30d77fdfd86e191ba581ab9bebeb0ce46b3c7c08c57b025439891612fe