Nextflow Registry | nf-core/last/lastal@0.0.0-0c7146d

nf-core/last/lastal @ 0.0.0-0c7146d

Aligns query sequences to target sequences indexed with lastdb

LAST align fastq fasta

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @charles-plessy

Maintainers: @charles-plessy

Aligns query sequences to target sequences indexed with lastdb

Add the following snippet to your workflow script to include this module.

include { LAST_LASTAL } from 'nf-core/last/lastal'

MIT License

Process

`Name`	`LAST_LASTAL`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fastx` file	FASTA/FASTQ file `*.{fasta,fastq}`
`param_file` file	Trained parameter file `*.train`

`index` directory	Directory containing the files of the LAST index `lastdb/`

Output 3 channels

#1 maf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.maf.gz` file	Gzipped MAF (Multiple Alignment Format) file `*.{maf.gz}`

#2 multiqc tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.tsv` file	Summary reporting the total alignment length (including gaps) and the percent identity computed with and without taking gaps in consideration (because there is no standard definition of percent identity). `*.tsv`

#3 versions_last tuple

`${task.process}` string	The name of the process
`last` string	The name of the tool
`lastal --version \| sed 's/lastal //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
last	LAST finds & aligns related regions of sequences.	https://gitlab.com/mcfrith/last

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:51:46 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Flast%2Flastal/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/last/lastal/blobs/sha256:7bc3afe5f0a3e5504d9cdef6dd89fea28e7540e749b767d8f538c083c11788b8
Size	3.9 KB
Checksum	sha256:7bc3afe5f0a3e5504d9cdef6dd89fea28e7540e749b767d8f538c083c11788b8
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:51:46 (UTC)		1	3.9 KB	-