Nextflow Registry | nf-core/kmcp/index@0.0.0-0c7146d

nf-core/kmcp/index @ 0.0.0-0c7146d

Construct KMCP database from k-mer files

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sofstam

Maintainers: @sofstam

Construct KMCP database from k-mer files

Add the following snippet to your workflow script to include this module.

include { KMCP_INDEX } from 'nf-core/kmcp/index'

MIT License

Process

`Name`	`KMCP_INDEX`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`compute_dir` directory	Output directory generated by "kmcp compute" `*/`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`taxdmp` directory	List or directory containing NCBI-like taxdmp files (nodes.dmp, names.dmp, and optionally, merged.dmp, delnodes.dmp) `*/`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`seq2taxidmap` file	Kraken2 style sequence to taxid mapping file, with two columns: sequence ID and taxid (e.g. "accession1\t12345") `*.map`

Output 3 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.log` file	A log of kmcp/index output `*.log`

#2 kmcp tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}` directory	Output directory containing the database from k-mer files. `*/`

#3 versions_kmcp tuple

`${task.process}` string	The name of the process
`kmcp` string	The name of the tool
`kmcp version 2>&1 \| sed 's/^.*kmcp v//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
kmcp	Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping	https://github.com/shenwei356/kmcp

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:51:04 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkmcp%2Findex/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kmcp/index/blobs/sha256:ae256b083b2fe3aa8c07e84237c6c2d7b0e406df0f7d832f2b7c62cbee247f1a
Size	2.6 KB
Checksum	sha256:ae256b083b2fe3aa8c07e84237c6c2d7b0e406df0f7d832f2b7c62cbee247f1a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:51:04 (UTC)		1	2.6 KB	-