nf-core/kmcp/compute @ 0.0.0-0c7146d
Summary
Generate k-mers (sketches) from FASTA/Q sequences
Get started
Add the following snippet to your workflow script to include this module.
include { KMCP_COMPUTE } from 'nf-core/kmcp/compute'
License
MIT License
Process
Name
|
KMCP_COMPUTE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sequences
file
|
List of fasta files, or a directory containing FASTA files **/*.{fa,fa.gz,fasta,fasta.gz,fna,fna.gz}
|
Output
3 channels
#1
info
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/_info.txt
file
|
Summary file that is generated for later use *_info.txt
|
#2
outdir
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Output directory containing all .unik files and a summary file in .txt format. Every .unik file contains the sequence/reference ID,chunk index, number of chunks, and genome size of reference. */
|
#3
versions_kmcp
tuple
${task.process}
string
|
The name of the process |
|---|---|
kmcp
string
|
The name of the tool |
kmcp version 2>&1 | sed 's/^.*kmcp v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kmcp | Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping | https://github.com/shenwei356/kmcp |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 8098ab9d800821e8b18e17fd515ed1e4ebc523f4 |
| Release Date | 08 Apr 2026 18:51:03 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkmcp%2Fcompute/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kmcp/compute/blobs/sha256:9c6adae01e3e4087050694ecebd8a2a8d24b0bdbf6b209aba20ceaa1d1cfa6de |
| Size | 2.7 KB |
| Checksum | sha256:9c6adae01e3e4087050694ecebd8a2a8d24b0bdbf6b209aba20ceaa1d1cfa6de |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:51:03 (UTC) | 1 | 2.7 KB | - |