nf-core/kleborate @ 0.0.0-0c7146d
Summary
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC).
Get started
Add the following snippet to your workflow script to include this module.
include { KLEBORATE } from 'nf-core/kleborate'
License
MIT License
Process
Name
|
KLEBORATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastas
list
|
Klebsiella genome assemblies to be screened *.fasta
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Result file generated after screening *.txt
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| kleborate | Screening Klebsiella genome assemblies for MLST, sub-species, and other Klebsiella related genes of interest | https://github.com/katholt/Kleborate |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:57 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkleborate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kleborate/blobs/sha256:a029c6cabd3c43ac10b1186f9e0d6137398691a21d8affe9203c3b36c557cfa0 |
| Size | 2.3 KB |
| Checksum | sha256:a029c6cabd3c43ac10b1186f9e0d6137398691a21d8affe9203c3b36c557cfa0 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:57 (UTC) | 1 | 2.3 KB | - |