Nextflow Registry | nf-core/kallistobustools/ref@0.0.0-0c7146d

nf-core/kallistobustools/ref @ 0.0.0-0c7146d

index creation for kb count quantification of single-cell data.

scRNA-seq count single-cell kallisto bustools index

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @flowuenne

Maintainers: @flowuenne

index creation for kb count quantification of single-cell data.

Add the following snippet to your workflow script to include this module.

include { KALLISTOBUSTOOLS_REF } from 'nf-core/kallistobustools/ref'

MIT License

Process

`Name`	`KALLISTOBUSTOOLS_REF`

Input 3 channels

`fasta` file	Genomic DNA fasta file `*.{fasta,fasta.gz}`

`gtf` file	Genomic gtf file `*.{gtf,gtf.gz}`

`workflow_mode` string	String value defining workflow to use, can be one of "standard", "nac", "lamanno" (obsolete) `{standard,lamanno,nac}`

Output 7 channels

#1 t2g

`t2g.txt` file	Transcript to gene table `*t2g.{txt}`

#2 cdna

`cdna.fa` file	cDNA fasta file `*cdna.{fa}`

#3 index

`kb_ref_out.idx` file	kb ref index file `*kb_ref_out.idx`

#4 intron

`intron.fa` file	Intron fasta file `*intron.{fa}`

#5 cdna_t2c

`cdna_t2c.txt` file	cDNA transcript to capture file `*cdna_t2c.{txt}`

#6 versions

`versions.yml` file	File containing software versions `versions.yml`

#7 intron_t2c

`intron_t2c.txt` file	Intron transcript to capture file `*intron_t2c.{txt}`

Tool	Description	Homepage
kb	kallisto\|bustools (kb) is a tool developed for fast and efficient processing of single-cell OMICS data.	https://www.kallistobus.tools/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:50:48 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkallistobustools%2Fref/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kallistobustools/ref/blobs/sha256:28ee4dde2dfefc1759e2d9ab5df2d12ab27fa186eb6dfdb5fb12d0fb7f9cb7bf
Size	2.9 KB
Checksum	sha256:28ee4dde2dfefc1759e2d9ab5df2d12ab27fa186eb6dfdb5fb12d0fb7f9cb7bf
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:50:48 (UTC)		1	2.9 KB	-