nf-core/kaiju/mergeoutputs @ 0.0.0-0c7146d
Summary
Merge two tab-separated output files of Kaiju and Kraken in the column format
Get started
Add the following snippet to your workflow script to include this module.
include { KAIJU_MERGEOUTPUTS } from 'nf-core/kaiju/mergeoutputs'
License
MIT License
Process
Name
|
KAIJU_MERGEOUTPUTS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
kaiju
file
|
Results with taxonomic classification of each read from Kaiju |
kraken
file
|
Results with taxonomic classification of each read from Kraken *.{tsv}
|
db
directory
|
List containing the database and nodes files for Kaiju e.g. [ 'database.fmi', 'nodes.dmp' ] |
|---|
Output
2 channels
#1
merged
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Results with merged taxonomic classification of each read based on the given strategy '1', '2', 'lca' [default] or 'lowest' *.tsv
|
#2
versions_kaiju
tuple
${task.process}
string
|
The name of the process |
|---|---|
kaiju
string
|
The name of the tool |
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kaiju | Fast and sensitive taxonomic classification for metagenomics | https://kaiju.binf.ku.dk/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fmergeoutputs/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kaiju/mergeoutputs/blobs/sha256:fc738e1a3bf38e2f5d6b2de7732ddd20cfe3a0beb5d7193dcdac6e4b4c7854ee |
| Size | 3.0 KB |
| Checksum | sha256:fc738e1a3bf38e2f5d6b2de7732ddd20cfe3a0beb5d7193dcdac6e4b4c7854ee |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:37 (UTC) | 1 | 3.0 KB | - |