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nf-core/kaiju/mergeoutputs @ 0.0.0-0c7146d

Merge two tab-separated output files of Kaiju and Kraken in the column format

Latest version: 0.0.0-0c7146d
Total downloads: 1
Source: nf-core/modules
Authors: @Joon-Klaps
Maintainers: @Joon-Klaps

Summary

Merge two tab-separated output files of Kaiju and Kraken in the column format

Get started

Add the following snippet to your workflow script to include this module.

include { KAIJU_MERGEOUTPUTS } from 'nf-core/kaiju/mergeoutputs'

License

MIT License

Process
Name KAIJU_MERGEOUTPUTS
Input 2 channels
#1 tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

kaiju file

Results with taxonomic classification of each read from Kaiju

kraken file

Results with taxonomic classification of each read from Kraken

*.{tsv}
db directory

List containing the database and nodes files for Kaiju e.g. [ 'database.fmi', 'nodes.dmp' ]

Output 2 channels
#1 merged tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.tsv file

Results with merged taxonomic classification of each read based on the given strategy '1', '2', 'lca' [default] or 'lowest'

*.tsv
#2 versions_kaiju tuple
${task.process} string

The name of the process

kaiju string

The name of the tool

kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //' eval

The expression to obtain the version of the tool

Tool Description Homepage
kaiju Fast and sensitive taxonomic classification for metagenomics https://kaiju.binf.ku.dk/
Version 0.0.0-0c7146d
Commit ID 135d883a43b1a2324b4112cd270cf22e20835533
Release Date 08 Apr 2026 18:50:37 (UTC)
Download URL https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fmergeoutputs/0.0.0-0c7146d/download
OCI Store URL https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kaiju/mergeoutputs/blobs/sha256:fc738e1a3bf38e2f5d6b2de7732ddd20cfe3a0beb5d7193dcdac6e4b4c7854ee
Size 3.0 KB
Checksum sha256:fc738e1a3bf38e2f5d6b2de7732ddd20cfe3a0beb5d7193dcdac6e4b4c7854ee
Downloads 1
Version Date Status Downloads Size Diff
0.0.0-0c7146d 08 Apr 2026 18:50:37 (UTC) 1 3.0 KB -