nf-core/jvarkit/dict2bed @ 0.0.0-0c7146d
Summary
Extract BED file from hts files containing a dictionary (VCF,BAM, CRAM, DICT, etc...)
Get started
Add the following snippet to your workflow script to include this module.
include { JVARKIT_DICT2BED } from 'nf-core/jvarkit/dict2bed'
License
MIT License
Process
Name
|
JVARKIT_DICT2BED |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing dict file information e.g. [ id:'test_reference' ] |
|---|---|
dict_files
file
|
File(s) containing a dictionary VCF/BCF/BAM/DICT etc... *.{vcf,bcf,vcf.gz,bcf.gz,dict,fai,bam,cram,interval_list}
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing VCF information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
BED output file *.{vcf,bcf,vcf.gz,bcf.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| jvarkit | Java utilities for Bioinformatics. | https://github.com/lindenb/jvarkit |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fjvarkit%2Fdict2bed/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/jvarkit/dict2bed/blobs/sha256:693049841e19f9af7c69a48824b96855cba88b0928440523b1d2bf437b50572d |
| Size | 2.5 KB |
| Checksum | sha256:693049841e19f9af7c69a48824b96855cba88b0928440523b1d2bf437b50572d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:21 (UTC) | 1 | 2.5 KB | - |