Nextflow Registry | nf-core/iphop/predict@0.0.0-0c7146d

nf-core/iphop/predict @ 0.0.0-0c7146d

Predict phage host using iPHoP

metagenomics iphop database download phage bacteria host

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @CarsonJM

Maintainers: @CarsonJM

Predict phage host using iPHoP

Add the following snippet to your workflow script to include this module.

include { IPHOP_PREDICT } from 'nf-core/iphop/predict'

MIT License

Process

`Name`	`IPHOP_PREDICT`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	FASTA file containing phage contigs/scaffolds/chromosomes `*.{fasta,fna,fa}`

`iphop_db` directory	Directory pointing to iPHoP database

Output 4 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 iphop_genus tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`Host_prediction_to_genus_m*.csv` file	File containing integrated host predictions at genus level, with a minimum score defined by the `--min_score` argument `Host_prediction_to_genus_m*.csv`

#3 iphop_genome tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`Host_prediction_to_genome_m*.csv` file	File containing integrated host predictions at host genome level, with a minimum score defined by the `--min_score` argument `Host_prediction_to_genome_m*.csv`

#4 iphop_detailed_output tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`Detailed_output_by_tool.csv` file	File containing each phage's top 5 hits via each method `Detailed_output_by_tool.csv`

Tool	Description	Homepage
iphop	Predict host genus from genomes of uncultivated phages.	https://bitbucket.org/srouxjgi/iphop/src/main/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:49:21 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fiphop%2Fpredict/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/iphop/predict/blobs/sha256:2bf0edccb5bc09ed1d16ac763c999615dd8bad6142d37033f0fea4eca4e394f8
Size	2.9 KB
Checksum	sha256:2bf0edccb5bc09ed1d16ac763c999615dd8bad6142d37033f0fea4eca4e394f8
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:49:21 (UTC)		1	2.9 KB	-