Nextflow Registry | nf-core/interproscan@0.0.0-0c7146d

nf-core/interproscan @ 0.0.0-0c7146d

Produces protein annotations and predictions from an amino acids FASTA file

annotation fasta protein dna interproscan

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @toniher @mahesh-panchal

Maintainers: @toniher @vagkaratzas @mahesh-panchal

Produces protein annotations and predictions from an amino acids FASTA file

Add the following snippet to your workflow script to include this module.

include { INTERPROSCAN } from 'nf-core/interproscan'

MIT License

Process

`Name`	`INTERPROSCAN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Input fasta file containing the amino acid or dna query sequences `*.{fa,fasta,fa.gz,fasta.gz}`

`interproscan_database` directory	Path to the interproscan database (untarred http://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${version_major}-${version_minor}/interproscan-${version_major}-${version_minor}-64-bit.tar.gz)

Output 5 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information
`*.tsv` file	Tab separated file containing with detailed hits `*.{tsv}`

#2 xml tuple

`meta` map	Groovy Map containing sample information
`*.xml` file	XML file containing with detailed hits `*.{xml}`

#3 gff3 tuple

`meta` map	Groovy Map containing sample information
`*.gff3` file	GFF3 file containing with detailed hits `*.{gff3}`

#4 json tuple

`meta` map	Groovy Map containing sample information
`*.json` file	JSON file containing with detailed hits `*.{json}`

#5 versions_interproscan tuple

`${task.process}` string	The name of the process
`interproscan` string	The name of the tool
`interproscan.sh --version \| sed "1!d; s/.*version //"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
interproscan	InterPro integrates together predictive information about proteins function from a number of partner resources	https://www.ebi.ac.uk/interpro/search/sequence/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:49:18 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Finterproscan/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/interproscan/blobs/sha256:1a17c9c4193a926a2d5c5a5b9d41f6542cec6cb133f731b5badab6f22d055411
Size	5.4 KB
Checksum	sha256:1a17c9c4193a926a2d5c5a5b9d41f6542cec6cb133f731b5badab6f22d055411
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:49:18 (UTC)		1	5.4 KB	-