Nextflow Registry | nf-core/igvreports@0.0.0-0c7146d

nf-core/igvreports @ 0.0.0-0c7146d

A Python application to generate self-contained HTML reports for variant review and other genomic applications

vcf variant genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @souljamie

Maintainers: @souljamie

A Python application to generate self-contained HTML reports for variant review and other genomic applications

Add the following snippet to your workflow script to include this module.

include { IGVREPORTS } from 'nf-core/igvreports'

MIT License

Process

`Name`	`IGVREPORTS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`sites` file	VCF, BED, MAF, BEDPE, or generic tab delimited file of genomic variant sites
`tracks` file	List of any set of files of the types that IGV can display, eg BAM/CRAM, GTF/GFF, VCF, BED, etc
`tracks_indices` file	List of indices for the tracks

#2 tuple

`meta2` map	Groovy Map containing genome information e.g. [ id:'genome_name' ]
`fasta` file	Reference fasta file `*.{fasta,fa}`
`fai` file	Reference fasta file index `*.{fai}`

Output 2 channels

#1 report tuple

`meta` file	html report with a table of genomic sites and an embedded IGV genome browser for viewing data for each site `*.{html}`
`*.html` file	html report with a table of genomic sites and an embedded IGV genome browser for viewing data for each site `*.{html}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
igvreports	Creates self-contained html pages for visual variant review with IGV (igv.js).	https://github.com/igvteam/igv-reports

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:48:52 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Figvreports/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/igvreports/blobs/sha256:84bc609247e819ccb91e2eb29932917b0fbb9e792a8f2cd60fe395a05f9bea64
Size	2.9 KB
Checksum	sha256:84bc609247e819ccb91e2eb29932917b0fbb9e792a8f2cd60fe395a05f9bea64
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:48:52 (UTC)		1	2.9 KB	-