nf-core/idr @ 0.0.0-0c7146d
Summary
Measures reproducibility of ChIP-seq, ATAC-seq peaks using IDR (Irreproducible Discovery Rate)
Get started
Add the following snippet to your workflow script to include this module.
include { IDR } from 'nf-core/idr'
License
MIT License
Process
Name
|
IDR |
|---|
Input
3 channels
peaks
list
|
BED, narrowPeak or broadPeak files of replicates *
|
|---|
peak_type
string
|
Type of peak file {narrowPeak,broadPeak,bed}
|
|---|
prefix
string
|
Prefix for output files |
|---|
Output
4 channels
#1
idr
*idrValues.txt
file
|
Text file containing IDR values *.{txt}
|
|---|
#2
log
*log.txt
file
|
Log file *.{txt}
|
|---|
#3
png
*.png
file
|
Plot generated by idr *{.png}
|
|---|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| idr | The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fidr/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/idr/blobs/sha256:ef475c4cdea6f1b4768561895ace3ebbbf5772d1ddf20bf72a8307fdeb32cbae |
| Size | 2.7 KB |
| Checksum | sha256:ef475c4cdea6f1b4768561895ace3ebbbf5772d1ddf20bf72a8307fdeb32cbae |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:47 (UTC) | 1 | 2.7 KB | - |