nf-core/idemux @ 0.0.0-0c7146d
Summary
Demultiplex paired-end FASTQ files from QuantSeq-Pool
Get started
Add the following snippet to your workflow script to include this module.
include { IDEMUX } from 'nf-core/idemux'
License
MIT License
Process
Name
|
IDEMUX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'NVQ', lane:1 ] |
|---|---|
reads
file
|
List of input FastQ files Undetermined_S*.fastq.gz
|
samplesheet
file
|
Input samplesheet *.{csv}
|
Output
4 channels
#1
fastq
tuple
meta
file
|
Demultiplexed sample FASTQ files *.fastq.gz
|
|---|---|
[!undetermined]*.fastq.gz
file
|
Demultiplexed sample FASTQ files *.fastq.gz
|
#2
stats
demultipexing_stats.tsv
file
|
Demultiplexing Stats demultipexing_stats.tsv
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
undetermined
tuple
meta
file
|
Demultiplexed sample FASTQ files *.fastq.gz
|
|---|---|
undetermined_R?.fastq.gz
file
|
Optional undetermined sample FASTQ files Undetermined_R?.fastq.gz
|
| Tool | Description | Homepage |
|---|---|---|
| idemux | A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes. | https://github.com/Lexogen-Tools/idemux |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:45 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fidemux/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/idemux/blobs/sha256:9f9e67ddfdb2a501d5efc00a3567780af25f04f91473468d2ff7c6fd26f6ec7d |
| Size | 9.0 KB |
| Checksum | sha256:9f9e67ddfdb2a501d5efc00a3567780af25f04f91473468d2ff7c6fd26f6ec7d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:45 (UTC) | 1 | 9.0 KB | - |