nf-core/icountmini/summary @ 0.0.0-0c7146d
Summary
Report proportion of cross-link events/sites on each region type.
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_SUMMARY } from 'nf-core/icountmini/summary'
License
MIT License
Process
Name
|
ICOUNTMINI_SUMMARY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks |
segmentation
file
|
A iCount segmentation file *.{gtf}
|
|---|
Output
4 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
summary_gene
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*summary_gene.tsv
file
|
Summary gene output stats file *summary_gene.tsv
|
#3
summary_type
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*summary_type.tsv
file
|
Summary type output stats file *summary_type.tsv
|
#4
summary_subtype
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*summary_subtype.tsv
file
|
Summary subtype output stats file *summary_subtype.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://icount.readthedocs.io/en/latest/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:43 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fsummary/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/icountmini/summary/blobs/sha256:bf1299906472b7dca2c3a3a0d7a4bafbf89691334f088d8cff58894a6cc5a948 |
| Size | 2.6 KB |
| Checksum | sha256:bf1299906472b7dca2c3a3a0d7a4bafbf89691334f088d8cff58894a6cc5a948 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:43 (UTC) | 1 | 2.6 KB | - |