nf-core/icountmini/sigxls @ 0.0.0-0c7146d
Summary
Runs iCount sigxls on a BED file of crosslinks
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_SIGXLS } from 'nf-core/icountmini/sigxls'
License
MIT License
Process
Name
|
ICOUNTMINI_SIGXLS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks *.{bam,bam.gz}
|
segmentation
file
|
A iCount segmentation file *.{gtf}
|
|---|
Output
3 channels
#1
scores
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.scores.tsv
file
|
Crosslink scores calculated by iCount *.{tsv}
|
#2
sigxls
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sigxls.bed.gz
file
|
sigxls bed file *.{bed.gz}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://github.com/ulelab/iCount-Mini |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:41 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fsigxls/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/icountmini/sigxls/blobs/sha256:7c6d17743dbf22b0e1682470811b9db1d5ca9c8b48b912c67fddd633ebb86f70 |
| Size | 2.5 KB |
| Checksum | sha256:7c6d17743dbf22b0e1682470811b9db1d5ca9c8b48b912c67fddd633ebb86f70 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:41 (UTC) | 1 | 2.5 KB | - |