Nextflow Registry | nf-core/hmmer/hmmpress@0.0.0-0c7146d

nf-core/hmmer/hmmpress @ 0.0.0-0c7146d

compress and index profile database for hmmscan

hidden Markov model HMM hmmer hmmpress hmmscan

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @ochkalova

Maintainers: @ochkalova

compress and index profile database for hmmscan

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMPRESS } from 'nf-core/hmmer/hmmpress'

MIT License

Process

`Name`	`HMMER_HMMPRESS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`hmmfile` file	HMMER flatfile database of HMM profiles `*`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 compressed_db tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.h3?` list	Binary files with compressed profiles and their index `*.h3?`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:56 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmpress/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hmmer/hmmpress/blobs/sha256:9c8aeec19eace47b9c89afe2faea38a4d6cddca2118527cc005602104ceb465d
Size	2.4 KB
Checksum	sha256:9c8aeec19eace47b9c89afe2faea38a4d6cddca2118527cc005602104ceb465d
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:56 (UTC)		1	2.4 KB	-