Nextflow Registry | nf-core/hmmer/eslreformat@0.0.0-0c7146d

nf-core/hmmer/eslreformat @ 0.0.0-0c7146d

reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values.

sort hmmer reformat

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

Summary

Get started

Add the following snippet to your workflow script to include this module.

include { HMMER_ESLREFORMAT } from 'nf-core/hmmer/eslreformat'

License

MIT License

Process

`Name`	`HMMER_ESLREFORMAT`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`seqfile` file	Sequences, aligned or not, in any supported format `*`

`postprocessing_script` string	Post processing script in shell, e.g., '\| sed "/^>/!s/-//g"' `\| *`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 seqreformated tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`..gz` file	Reformatted sequence file `..gz`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:49 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Feslreformat/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hmmer/eslreformat/blobs/sha256:bd864c2e104552e471ce277d3157e42fa02daad1c1fb462737b0689d1b77303e
Size	2.8 KB
Checksum	sha256:bd864c2e104552e471ce277d3157e42fa02daad1c1fb462737b0689d1b77303e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:49 (UTC)		1	2.8 KB	-