nf-core/hisat2/extractsplicesites @ 0.0.0-0c7146d
Summary
Extracts splicing sites from a gtf files
Get started
Add the following snippet to your workflow script to include this module.
include { HISAT2_EXTRACTSPLICESITES } from 'nf-core/hisat2/extractsplicesites'
License
MIT License
Process
Name
|
HISAT2_EXTRACTSPLICESITES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
gtf
file
|
Reference gtf annotation file *.{gtf}
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
*.splice_sites.txt
file
|
Splice sites in txt file *.txt
|
#2
versions_hisat2
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
hisat2
string
|
The tool name |
hisat2 --version | grep -o "version [^ ]*" | cut -d " " -f 2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hisat2 | HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. | https://daehwankimlab.github.io/hisat2/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:47:29 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhisat2%2Fextractsplicesites/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hisat2/extractsplicesites/blobs/sha256:97afdd0f382a814f8a72e0d6d46ce34840b5cce942ef297108c3e66abd0b78ca |
| Size | 2.4 KB |
| Checksum | sha256:97afdd0f382a814f8a72e0d6d46ce34840b5cce942ef297108c3e66abd0b78ca |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:47:29 (UTC) | 1 | 2.4 KB | - |