Nextflow Registry | nf-core/haplogrep2/classify@0.0.0-0c7146d

nf-core/haplogrep2/classify @ 0.0.0-0c7146d

classification into haplogroups

haplogroups classify mtDNA

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @lucpen

Maintainers: @lucpen

classification into haplogroups

Add the following snippet to your workflow script to include this module.

include { HAPLOGREP2_CLASSIFY } from 'nf-core/haplogrep2/classify'

MIT License

Process

`Name`	`HAPLOGREP2_CLASSIFY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`inputfile` file	valid options are hsd, vcf, or fasta files `*.{vcf,vcf.gz,fasta,hsd}`

`format` string	either "vcf", "fasta" or "hsd"

Output 2 channels

#1 txt tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.txt` file	text file with classification information `*.{txt}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
haplogrep2	A tool for mtDNA haplogroup classification.	https://github.com/seppinho/haplogrep-cmd

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:46:49 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhaplogrep2%2Fclassify/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/haplogrep2/classify/blobs/sha256:84d51d59dc859360840a49687ad436f5ffe0e053bc0d6ee2fef43a769c0ab351
Size	2.2 KB
Checksum	sha256:84d51d59dc859360840a49687ad436f5ffe0e053bc0d6ee2fef43a769c0ab351
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:46:49 (UTC)		1	2.2 KB	-