nf-core/gvcftools/extractvariants @ 0.0.0-0c7146d
Summary
Removes all non-variant blocks from a gVCF file to produce a smaller variant-only VCF file.
Get started
Add the following snippet to your workflow script to include this module.
include { GVCFTOOLS_EXTRACTVARIANTS } from 'nf-core/gvcftools/extractvariants'
License
MIT License
Process
Name
|
GVCFTOOLS_EXTRACTVARIANTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gvcf
file
|
GVCF file *.{g.vcf,gvcf}.gz
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz
file
|
Converted variant-only VCF file *.vcf.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gvcftools | gvcftools is a package of small utilities for creating and analyzing gVCF files | https://sites.google.com/site/gvcftools/home |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:46:29 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgvcftools%2Fextractvariants/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gvcftools/extractvariants/blobs/sha256:a34f4efd86d4a0be458768a87873530289050e17f2065848226d30723b0bda18 |
| Size | 2.3 KB |
| Checksum | sha256:a34f4efd86d4a0be458768a87873530289050e17f2065848226d30723b0bda18 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:46:29 (UTC) | 1 | 2.3 KB | - |