nf-core/gt/gff3 @ 0.0.0-0c7146d
Summary
GenomeTools gt-gff3 utility to parse, possibly transform, and output GFF3 files
Get started
Add the following snippet to your workflow script to include this module.
include { GT_GFF3 } from 'nf-core/gt/gff3'
License
MIT License
Process
Name
|
GT_GFF3 |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gff3
file
|
Input gff3 file *.{gff,gff3}
|
Output
3 channels
#1
gt_gff3
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gt.gff3
file
|
Parsed gff3 file produced only if there is no parsing error *.gt.gff3
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
error_log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.error.log
file
|
Error log if gt-gff3 failed to parse the input gff3 file *.error.log
|
| Tool | Description | Homepage |
|---|---|---|
| gt | The GenomeTools genome analysis system | https://genometools.org/index.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:45:36 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgt%2Fgff3/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gt/gff3/blobs/sha256:44a5acc217baae7c8c7bf5c51a4aed2aeb20694627f2aa269ad02b9ffb7c68b2 |
| Size | 2.6 KB |
| Checksum | sha256:44a5acc217baae7c8c7bf5c51a4aed2aeb20694627f2aa269ad02b9ffb7c68b2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:45:36 (UTC) | 1 | 2.6 KB | - |