nf-core/gridss/annotate @ 0.0.0-071d7b4
Summary
Annotates single breakends in a GRIDSS VCF with RepeatMasker annotations using gridss_annotate_vcf_repeatmasker.
Get started
Add the following snippet to your workflow script to include this module.
include { GRIDSS_ANNOTATE } from 'nf-core/gridss/annotate'
License
MIT License
Process
Name
|
GRIDSS_ANNOTATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
vcf
file
|
Input VCF file generated with GRIDSS *.{vcf,vcf.gz}
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
*.vcf.gz
file
|
Annotated VCF file compressed with bgzip *.vcf.gz
|
#2
versions_gridss
tuple
${task.process}
string
|
The process |
|---|---|
gridss
string
|
The tool name |
GeneratePonBedpe --version 2>&1 | sed 's/-gridss//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gridss | GRIDSS: the Genomic Rearrangement IDentification Software Suite | n/a |
| Version | 0.0.0-071d7b4 |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 09 Apr 2026 21:15:26 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgridss%2Fannotate/0.0.0-071d7b4/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gridss/annotate/blobs/sha256:e6796f3a1ee6f6ae801bb672cdab391690aaa75062c82d3208cbc2f3772dac8d |
| Size | 2.3 KB |
| Checksum | sha256:e6796f3a1ee6f6ae801bb672cdab391690aaa75062c82d3208cbc2f3772dac8d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-071d7b4 | 09 Apr 2026 21:15:26 (UTC) | 1 | 2.3 KB | - |