nf-core/graphtyper/vcfconcatenate @ 0.0.0-0c7146d
Summary
Tools for population-scale genotyping using pangenome graphs.
Get started
Add the following snippet to your workflow script to include this module.
include { GRAPHTYPER_VCFCONCATENATE } from 'nf-core/graphtyper/vcfconcatenate'
License
MIT License
Process
Name
|
GRAPHTYPER_VCFCONCATENATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
vcf
file
|
VCF files *.{vcf,vcf.gz}
|
Output
3 channels
#1
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.vcf.gz.tbi
file
|
Concatenated VCF file index *.{tbi}
|
#2
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.vcf.gz
file
|
Concatenated VCF file *.{vcf.gz}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| graphtyper | A graph-based variant caller capable of genotyping population-scale short read data sets while incorporating previously discovered variants. | https://github.com/DecodeGenetics/graphtyper |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:45:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgraphtyper%2Fvcfconcatenate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/graphtyper/vcfconcatenate/blobs/sha256:bf0b50526a98f803ea95f00e27951e1926e36608a9c150b0630aa274381a24a6 |
| Size | 2.8 KB |
| Checksum | sha256:bf0b50526a98f803ea95f00e27951e1926e36608a9c150b0630aa274381a24a6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:45:21 (UTC) | 1 | 2.8 KB | - |