nf-core/goat/taxonsearch @ 0.0.0-0c7146d
Summary
Query metadata for any taxon across the tree of life.
Get started
Add the following snippet to your workflow script to include this module.
include { GOAT_TAXONSEARCH } from 'nf-core/goat/taxonsearch'
License
MIT License
Process
Name
|
GOAT_TAXONSEARCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
taxon
string
|
The taxon to search. An NCBI taxon ID, or the name of a taxon at any rank. |
taxa_file
file
|
A file of NCBI taxonomy ID's (tips) and/or binomial names. Each line should contain a single entry.File size is limited to 500 entries. *.txt
|
Output
2 channels
#1
taxonsearch
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
TSV file containing search results. *.tsv
|
#2
versions_goat
tuple
${task.process}
string
|
The name of the process |
|---|---|
goat
string
|
The name of the tool |
goat-cli --version | cut -d' ' -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| goat | goat-cli is a command line interface to query the Genomes on a Tree Open API. | https://github.com/genomehubs/goat-cli |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:45:06 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgoat%2Ftaxonsearch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/goat/taxonsearch/blobs/sha256:de1e804555a0496ee9dcc05b10845029c703e8e3b96ad9ae1ab582d45f3959a6 |
| Size | 2.7 KB |
| Checksum | sha256:de1e804555a0496ee9dcc05b10845029c703e8e3b96ad9ae1ab582d45f3959a6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:45:06 (UTC) | 1 | 2.7 KB | - |