nf-core/glnexus @ 0.0.0-0c7146d
Summary
merge gVCF files and perform joint variant calling
Get started
Add the following snippet to your workflow script to include this module.
include { GLNEXUS } from 'nf-core/glnexus'
License
MIT License
Process
Name
|
GLNEXUS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
gvcfs
list
|
Input genomic vcf files *.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}
|
custom_config
file
|
Custom YML config for additional profiles *.{yml,yaml}
|
#2
tuple
meta2
map
|
Groovy Map containing regions information e.g. [ id:'test' ] |
|---|---|
bed
list
|
Input BED file *.bed
|
Output
2 channels
#1
bcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.bcf
file
|
merged BCF file *.bcf
|
#2
versions_glnexus
tuple
${task.process}
string
|
The name of the process |
|---|---|
glnexus
string
|
The name of the tool |
glnexus_cli 2>&1 | grep -oE '[0-9]+\.[0-9]+\.[0-9]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| glnexus | scalable gVCF merging and joint variant calling for population sequencing projects. | https://github.com/dnanexus-rnd/GLnexus |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:44:57 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fglnexus/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/glnexus/blobs/sha256:63b4fb0170ea9d8b199ac9eda7a5db3c1bacd924ae96cabe957d9304c7f318b6 |
| Size | 2.7 KB |
| Checksum | sha256:63b4fb0170ea9d8b199ac9eda7a5db3c1bacd924ae96cabe957d9304c7f318b6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:44:57 (UTC) | 1 | 2.7 KB | - |