Nextflow Registry | nf-core/gfatools/gfa2fa@0.0.0-0c7146d

nf-core/gfatools/gfa2fa @ 0.0.0-0c7146d

Converts GFA or rGFA files to FASTA

gfa rgfa fasta assembly genome graph genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mahesh-panchal

Maintainers: @mahesh-panchal

Converts GFA or rGFA files to FASTA

Add the following snippet to your workflow script to include this module.

include { GFATOOLS_GFA2FA } from 'nf-core/gfatools/gfa2fa'

MIT License

Process

`Name`	`GFATOOLS_GFA2FA`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`gfa` file	GFA or rGFA file `*.gfa`

Output 2 channels

#1 fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.fasta.gz` file	FASTA file `*.fasta`

#2 versions_gfatools tuple

`${task.process}` string	The name of the process
`gfatools` string	The name of the tool
`gfatools version \| sed '1!d; s/.* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
gfatools	Tools for manipulating sequence graphs in the GFA and rGFA formats	https://github.com/lh3/gfatools

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:44:29 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgfatools%2Fgfa2fa/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gfatools/gfa2fa/blobs/sha256:3031145db929208ad3a3131c5b381230517f5004f1a5bc0bdaddc92329b94a97
Size	2.1 KB
Checksum	sha256:3031145db929208ad3a3131c5b381230517f5004f1a5bc0bdaddc92329b94a97
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:44:29 (UTC)		1	2.1 KB	-