Nextflow Registry | nf-core/getorganelle/config@0.0.0-0c7146d

nf-core/getorganelle/config @ 0.0.0-0c7146d

Downloads databases needed for running getorganelle

assembly organelle mitochondria download database

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @erinyoung

Downloads databases needed for running getorganelle

Add the following snippet to your workflow script to include this module.

include { GETORGANELLE_CONFIG } from 'nf-core/getorganelle/config'

MIT License

Process

`Name`	`GETORGANELLE_CONFIG`

Input 1 channel

`organelle_type` string	Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)

Output 2 channels

#1 db tuple

`organelle_type` string	Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)
`getorganelle` directory	Downloaded database for GetOrganelle

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
getorganelle	Get organelle genomes from genome skimming data	https://github.com/Kinggerm/GetOrganelle

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:44:22 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgetorganelle%2Fconfig/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/getorganelle/config/blobs/sha256:256f6c97fee23225a8ef75301fe61763c4d0080a2ae7aeb180a6e5664bf25b61
Size	2.8 KB
Checksum	sha256:256f6c97fee23225a8ef75301fe61763c4d0080a2ae7aeb180a6e5664bf25b61
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:44:22 (UTC)		1	2.8 KB	-