nf-core/gem2/gemmappability @ 0.0.0-0b45cc0
Summary
Define the mappability of a reference
Get started
Add the following snippet to your workflow script to include this module.
include { GEM2_GEMMAPPABILITY } from 'nf-core/gem2/gemmappability'
License
MIT License
Process
Name
|
GEM2_GEMMAPPABILITY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
index
file
|
The index created with gem-indexer from the reference FASTA *.gem
|
read_length
integer
|
The read length to define the mappability of |
|---|
Output
2 channels
#1
map
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mappability
file
|
The resulting mappability file *.mappability
|
#2
versions_gem2
tuple
${task.process}
string
|
The name of the process |
|---|---|
gem2
string
|
The name of the tool |
20200110
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gem2 | GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability. | https://paoloribeca.science/gem |
| Version | 0.0.0-0b45cc0 |
|---|---|
| Commit ID | 0b45cc097cafcd4768e2f79b504333fee85940bc |
| Release Date | 29 Apr 2026 21:15:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgem2%2Fgemmappability/0.0.0-0b45cc0/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gem2/gemmappability/blobs/sha256:111bac6ee00c3043ac9e5b139a398c620e6407112955a3edd15478f02b5adedb |
| Size | 2.3 KB |
| Checksum | sha256:111bac6ee00c3043ac9e5b139a398c620e6407112955a3edd15478f02b5adedb |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0b45cc0 | 29 Apr 2026 21:15:33 (UTC) | 0 | 2.3 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:45 (UTC) | 1 | 2.4 KB | - |