nf-core/gatk4/splitintervals @ 0.0.0-0c7146d
Summary
Split intervals into sub-interval files.
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_SPLITINTERVALS } from 'nf-core/gatk4/splitintervals'
License
MIT License
Process
Name
|
GATK4_SPLITINTERVALS |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
intervals
file
|
Interval file |
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fasta
file
|
Reference FASTA *.{fa,fasta}
|
#3
tuple
meta3
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fai
file
|
Reference FASTA index *.fai
|
#4
tuple
meta4
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
dict
file
|
Reference sequence dictionary *.dict
|
Output
2 channels
#1
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
#2
split_intervals
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] *.interval_list
|
|---|---|
**.interval_list
map
|
Groovy Map containing sample information e.g. [ id:'test' ] *.interval_list
|
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:43:13 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fsplitintervals/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/splitintervals/blobs/sha256:2fe76037ecb34e307d1591adf0924b728a15d37124c126cc891ff01710077179 |
| Size | 2.9 KB |
| Checksum | sha256:2fe76037ecb34e307d1591adf0924b728a15d37124c126cc891ff01710077179 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:43:13 (UTC) | 1 | 2.9 KB | - |