nf-core/gatk4/indexfeaturefile @ 0.0.0-0c7146d
Summary
Creates an index for a feature file, e.g. VCF or BED file.
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_INDEXFEATUREFILE } from 'nf-core/gatk4/indexfeaturefile'
License
MIT License
Process
Name
|
GATK4_INDEXFEATUREFILE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
feature_file
file
|
VCF/BED file *.{vcf,vcf.gz,bed,bed.gz}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{tbi,idx}
file
|
Index for VCF/BED file *.{tbi,idx}
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:42:01 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Findexfeaturefile/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/indexfeaturefile/blobs/sha256:f106283def8e18c35187675cf6d99d0617583d91d7cf07f45158120c94034b9a |
| Size | 2.6 KB |
| Checksum | sha256:f106283def8e18c35187675cf6d99d0617583d91d7cf07f45158120c94034b9a |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:42:01 (UTC) | 1 | 2.6 KB | - |