nf-core/gatk4/gatherpileupsummaries @ 0.0.0-0c7146d
Summary
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Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_GATHERPILEUPSUMMARIES } from 'nf-core/gatk4/gatherpileupsummaries'
License
MIT License
Process
Name
|
GATK4_GATHERPILEUPSUMMARIES |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pileup
file
|
Pileup files from gatk4/getpileupsummaries *.pileups.table
|
dict
file
|
dictionary |
|---|
Output
2 channels
#1
table
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pileups.table
file
|
pileup summaries table file *.pileups.table
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:41:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fgatherpileupsummaries/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/gatherpileupsummaries/blobs/sha256:e3a088b0f980b8ecbf32056f74b7b79ba28947320308930be21d1c08ad358ff5 |
| Size | 2.7 KB |
| Checksum | sha256:e3a088b0f980b8ecbf32056f74b7b79ba28947320308930be21d1c08ad358ff5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:49 (UTC) | 1 | 2.7 KB | - |