nf-core/gatk4/calibratedragstrmodel @ 0.0.0-0c7146d
Summary
estimates the parameters for the DRAGstr model
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_CALIBRATEDRAGSTRMODEL } from 'nf-core/gatk4/calibratedragstrmodel'
License
MIT License
Process
Name
|
GATK4_CALIBRATEDRAGSTRMODEL |
|---|
Input
5 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
bam_index
file
|
index of the BAM/CRAM/SAM file *.{bai,crai,sai}
|
fasta
file
|
The reference FASTA file *.{fasta,fa}
|
|---|
fasta_fai
file
|
The index of the reference FASTA file *.fai
|
|---|
dict
file
|
The sequence dictionary of the reference FASTA file *.dict
|
|---|
strtablefile
file
|
The StrTableFile zip folder of the reference FASTA file *.zip
|
|---|
Output
2 channels
#1
dragstr_model
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
The DragSTR model *.txt
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4). Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:41:10 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fcalibratedragstrmodel/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/calibratedragstrmodel/blobs/sha256:8c7a2d6cff78f9dafe89fbcecbf60704e0ef0a445d13b1e3bf0b489d3f7c1e41 |
| Size | 3.7 KB |
| Checksum | sha256:8c7a2d6cff78f9dafe89fbcecbf60704e0ef0a445d13b1e3bf0b489d3f7c1e41 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:10 (UTC) | 1 | 3.7 KB | - |