Nextflow Registry | nf-core/gappa/examineheattree@0.0.0-0c7146d

nf-core/gappa/examineheattree @ 0.0.0-0c7146d

colours a phylogeny with placement densities

phylogeny phylogenetic placement heattree visualisation

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

colours a phylogeny with placement densities

Add the following snippet to your workflow script to include this module.

include { GAPPA_EXAMINEHEATTREE } from 'nf-core/gappa/examineheattree'

MIT License

Process

`Name`	`GAPPA_EXAMINEHEATTREE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`jplace` file	jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not `*.{jplace,jplace.gz}`

Output 7 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.log` file	log file from the run `*.log`

#2 svg tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.svg` file	coloured phylogenetic tree file in svg format `*.svg`

#3 nexus tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.nexus` file	coloured phylogenetic tree file in nexus format `*.nexus`

#4 newick tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.newick` file	phylogenetic tree file in newick format `*.newick`

#5 colours tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.colours.txt` file	colours used in plot `*.colours.txt`

#6 phyloxml tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.phyloxml` file	coloured phylogenetic tree file in phyloxml format `*.phyloxml`

#7 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
gappa	Genesis Applications for Phylogenetic Placement Analysis	https://github.com/lczech/gappa

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:40:45 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgappa%2Fexamineheattree/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gappa/examineheattree/blobs/sha256:ac4c2a4b850a857b7246a5ed3bb67e2af2abf059570dd7ae08bb118c121929e6
Size	3.0 KB
Checksum	sha256:ac4c2a4b850a857b7246a5ed3bb67e2af2abf059570dd7ae08bb118c121929e6
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:40:45 (UTC)		1	3.0 KB	-