Nextflow Registry | nf-core/ganon/buildcustom@0.0.0-0c7146d

nf-core/ganon/buildcustom @ 0.0.0-0c7146d

Build ganon database using custom reference sequences.

ganon metagenomics profiling taxonomy k-mer database

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Build ganon database using custom reference sequences.

Add the following snippet to your workflow script to include this module.

include { GANON_BUILDCUSTOM } from 'nf-core/ganon/buildcustom'

MIT License

Process

`Name`	`GANON_BUILDCUSTOM`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input` file	List of input FASTA files, or a directory containing input FASTA files. Note you must supply --input-extension via ext.args if FASTA extensions do not end in the default `fna.gz`. `*.{fasta,fna,fa,fa,fasta.gz,fna.gz,fa.gz,fa.gz}`

`input_tsv` string	(Optional) Specify an TSV file containing the paths, and relevant metadata to the input FASTA files to use the `--input-file` option. The 'file' column should be just the file name of each FASTA file (so that it's local to the working directory of the process). See ganon documentation for more more information on the other columns. `*tsv`

`taxonomy_files` file	Pre-downloaded taxonomy files of input sequences. See ganon docs for formats

`genome_size_files` file	Pre-downloaded NCBI or GTDB genome size files of input sequences. See ganon docs for formats `{species_genome_size.txt.gz,*_metadata.tar.gz}`

Output 3 channels

#1 db tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.{hibf,ibf,tax}` file	ganon database files `*.{ibf,tax}`

#2 info tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.info.tsv` file	Copy of target info generated. Can be used for updating database. `*info.tsv`

#3 versions_ganon tuple

`${task.process}` string	The name of the process
`ganon` string	The name of the tool
`ganon --version 2>1 \| sed 's/.*ganon //g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
ganon	ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently	https://github.com/pirovc/ganon

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:40:33 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fganon%2Fbuildcustom/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ganon/buildcustom/blobs/sha256:2f95d9852252123809b83a347291aa735cf9ccf6f2e1fa617a427d5ae3201ede
Size	3.3 KB
Checksum	sha256:2f95d9852252123809b83a347291aa735cf9ccf6f2e1fa617a427d5ae3201ede
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:40:33 (UTC)		1	3.3 KB	-