Nextflow Registry | nf-core/galah@0.0.0-0c7146d

nf-core/galah @ 0.0.0-0c7146d

Cluster genome FASTA files by average nucleotide identity

genomics cluster genome metagenomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @prototaxites

Maintainers: @prototaxites

Cluster genome FASTA files by average nucleotide identity

Add the following snippet to your workflow script to include this module.

include { GALAH } from 'nf-core/galah'

MIT License

Process

`Name`	`GALAH`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`bins` file	A list of fasta-formatted genomes for dereplication `*.{fa,fna,fa.gz, etc}`
`qc_table` file	(optional) A summary TSV from either CheckM [https://nf-co.re/modules/checkm_lineagewf], CheckM2 [https://nf-co.re/modules/checkm2_predict/], or a CSV in drep-style format [https://github.com/MrOlm/drep] with three columnns, `genome,completeness,contamination`. In both cases the first column should contain the names of the input genome files, minus the last file extension (i.e. if the genome is gzipped, the genome name should retain the .fasta extension). `*.{csv,tsv}`
`qc_format` string	Defines the type if input table in `qc_table`, if specified. `checkm\|checkm2\|genome_info`

Output 3 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.tsv` file	TSV file in the format `representative_genome` \t `member_genome` `*.tsv`

#2 versions_galah tuple

`${task.process}` string	The name of the process
`galah` string	The name of the tool
`galah --version \| sed "s/galah //"` eval	The expression to obtain the version of the tool

#3 dereplicated_bins tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`${prefix}/*` file	The representative genomes following dereplication by galah. `*`

Tool	Description	Homepage
galah	Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.	https://github.com/wwood/galah

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:40:27 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgalah/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/galah/blobs/sha256:6bcd59c843dd20b83fec2c80d77c9619beedf9ea772bc52f7526d9ce236c1de2
Size	3.3 KB
Checksum	sha256:6bcd59c843dd20b83fec2c80d77c9619beedf9ea772bc52f7526d9ce236c1de2
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:40:27 (UTC)		1	3.3 KB	-