nf-core/foldseek/createdb @ 0.0.0-0c7146d
Summary
Create a database from protein structures
Get started
Add the following snippet to your workflow script to include this module.
include { FOLDSEEK_CREATEDB } from 'nf-core/foldseek/createdb'
License
MIT License
Process
Name
|
FOLDSEEK_CREATEDB |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
pdb
file
|
Protein structure(s) in PDB, mmCIF or mmJSON format (also works with folder input) *.{pdb,mmcif,mmjson}
|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${meta.id}
directory
|
Directory containing pdb database files *
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| foldseek | Foldseek: fast and accurate protein structure search | https://search.foldseek.com/search |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:39:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffoldseek%2Fcreatedb/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/foldseek/createdb/blobs/sha256:d74bb086b05a21091881121153f94c2e4b942062671f26d0d8cfdb55ade669f5 |
| Size | 2.6 KB |
| Checksum | sha256:d74bb086b05a21091881121153f94c2e4b942062671f26d0d8cfdb55ade669f5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:39:51 (UTC) | 1 | 2.6 KB | - |