nf-core/flash @ 0.0.0-0c7146d
Summary
Perform merging of mate paired-end sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { FLASH } from 'nf-core/flash'
License
MIT License
Process
Name
|
FLASH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 2; i.e., paired-end data. *fastq.gz
|
Output
4 channels
#1
merged
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.extendedFrags.fastq.gz
file
|
The merged fastq reads .extendedFrags.fastq.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
histogram
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.hist
file
|
HistogramNumeric histogram of merged read lengths. .hist
|
#4
notcombined
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.notCombined_*.fastq.gz
file
|
Not combined reads from flash .notCombined_*.fastq.gz
|
| Tool | Description | Homepage |
|---|---|---|
| flash | Merge mates from fragments that are shorter than twice the read length | https://ccb.jhu.edu/software/FLASH/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:39:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fflash/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/flash/blobs/sha256:1db2a790821aafc3796b2ce6039fdba948ecb9a10f382a64e8b37323b776796d |
| Size | 2.5 KB |
| Checksum | sha256:1db2a790821aafc3796b2ce6039fdba948ecb9a10f382a64e8b37323b776796d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:39:37 (UTC) | 1 | 2.5 KB | - |