nf-core/fcsgx/fetchdb @ 0.0.0-0c7146d
Summary
Fetches the NCBI FCS-GX database using a provided manifest URL
Get started
Add the following snippet to your workflow script to include this module.
include { FCSGX_FETCHDB } from 'nf-core/fcsgx/fetchdb'
License
MIT License
Process
Name
|
FCSGX_FETCHDB |
|---|
Input
1 channel
manifest
file
|
URL to a FCXGX database https://ftp*.manifest
|
|---|
Output
2 channels
#1
database
$prefix
directory
|
A directory containing an FCSGX database |
|---|
#2
versions_fcsgx
tuple
${task.process}
string
|
The name of the process |
|---|---|
fcsgx
string
|
The name of the tool |
gx --help | sed '/build/!d; s/.*:v//; s/-.*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fcsgx | The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection. | https://github.com/ncbi/fcs-gx |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:39:01 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffcsgx%2Ffetchdb/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fcsgx/fetchdb/blobs/sha256:a68af802d2fc4b2a2ac090e3f7d41ebfbab0bd223ec99ca7d53ea6daa02d10b3 |
| Size | 2.3 KB |
| Checksum | sha256:a68af802d2fc4b2a2ac090e3f7d41ebfbab0bd223ec99ca7d53ea6daa02d10b3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:39:01 (UTC) | 1 | 2.3 KB | - |