nf-core/fastqscreen/buildfromindex @ 0.0.0-0c7146d
Summary
Build fastq screen config file from bowtie index files
Get started
Add the following snippet to your workflow script to include this module.
include { FASTQSCREEN_BUILDFROMINDEX } from 'nf-core/fastqscreen/buildfromindex'
License
MIT License
Process
Name
|
FASTQSCREEN_BUILDFROMINDEX |
|---|
Input
2 channels
genome_names
string
|
List of names for each index |
|---|
indexes
directory
|
Bowtie2 genome directories containing index files |
|---|
Output
2 channels
#1
database
FastQ_Screen_Genomes
directory
|
fastq screen database folder containing config file and index folders FastQ_Screen_Genomes
|
|---|
#2
versions_fastqscreen
tuple
${task.process}
string
|
The name of the process |
|---|---|
fastqscreen
string
|
The name of the tool |
fastq_screen --version 2>&1 | sed "s/^.*FastQ Screen v//;"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fastqscreen | FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect. | https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:38:16 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffastqscreen%2Fbuildfromindex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fastqscreen/buildfromindex/blobs/sha256:1059450b6b4f67a4221c0747b14f0963820a4e199fc91b96be522dca6db7d4ca |
| Size | 3.1 KB |
| Checksum | sha256:1059450b6b4f67a4221c0747b14f0963820a4e199fc91b96be522dca6db7d4ca |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:38:16 (UTC) | 1 | 3.1 KB | - |