Nextflow Registry | nf-core/fastme@0.0.0-0c7146d

nf-core/fastme @ 0.0.0-0c7146d

Distance-based phylogeny with FastME

phylogenetics newick minimum_evolution distance-based

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @itrujnara

Maintainers: @itrujnara

Distance-based phylogeny with FastME

Add the following snippet to your workflow script to include this module.

include { FASTME } from 'nf-core/fastme'

MIT License

Process

`Name`	`FASTME`

Input 1 channel

#1 tuple

`meta` map	A Groovy map containing sample information, e.g. [ id: "test" ]
`infile` file	MSA or distance matrix in Phylip format `*`
`initial_tree` file	Initial tree

Output 5 channels

#1 nwk tuple

`meta` map	A Groovy map containing sample information
`*.nwk` file	Final phylogeny in Newick format `*.nwk`

#2 stats tuple

`meta` map	A Groovy map containing sample information
`*_stat.txt` file	A text file with the statistics of the phylogeny `*_stat.txt`

#3 matrix tuple

`meta` map	A Groovy map containing sample information
`*.matrix.phy` file	Optional; the distance matrix in Phylip matrix format; it is generated if the -O option is passed in ext.args, although the provided file name will be overwritten `*.matrix.phy`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 bootstrap tuple

`meta` map	A Groovy map containing sample information
`*.bootstrap` file	A file containing all bootstrap trees in Newick format; it is generated if the -B option is passed in ext.args (and bootstrap is used), although the provided file name will be overwritten `*.bootstrap`

Tool	Description	Homepage
fastme	A comprehensive, accurate and fast distance-based phylogeny inference program.	http://www.atgc-montpellier.fr/fastme

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:38:03 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffastme/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fastme/blobs/sha256:7f22f95c87123010d7e2e458178e51c38d0a8b75d49e7a8e8f6537c0170cd6c0
Size	3.4 KB
Checksum	sha256:7f22f95c87123010d7e2e458178e51c38d0a8b75d49e7a8e8f6537c0170cd6c0
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:38:03 (UTC)		1	3.4 KB	-