Nextflow Registry | nf-core/fastcov@0.0.0-0b45cc0

nf-core/fastcov @ 0.0.0-0b45cc0

Generate a coverage plot from one or more bam files

coverage bam map

Latest version: 0.0.0-0b45cc0

Total downloads: 1

Source: nf-core/modules

Authors: @davidfischer

Maintainers: @davidfischer

Generate a coverage plot from one or more bam files

Add the following snippet to your workflow script to include this module.

include { FASTCOV } from 'nf-core/fastcov'

MIT License

Process

`Name`	`FASTCOV`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bam` file	BAM file `*.bam`
`index` file	BAM index file `*.bai`

`file_ext` string	output plot file extension string, e.g. `png` or `pdf`

Output 3 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`log.txt` file	Log output redirected to a text file `log.txt`

#2 coverage_plot tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]` `*.{png,svg,pdf}`
`${prefix}.${file_ext}` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]` `*.{png,svg,pdf}`

#3 versions_fastcov tuple

`${task.process}` string	The name of the process
`fastcov` string	The name of the tool
`0.1.3` string	The expression to obtain the version of the tool

Tool	Description	Homepage
fastcov	Generate a coverage plot from one or more bam files	https://github.com/RaverJay/fastcov/

Version	0.0.0-0b45cc0
Commit ID	0b45cc097cafcd4768e2f79b504333fee85940bc
Release Date	29 Apr 2026 21:15:27 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffastcov/0.0.0-0b45cc0/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fastcov/blobs/sha256:428d558507a00cdbffb0997681c53f7d82ba740c3f6c21489fda5ef5ded8c55d
Size	2.3 KB
Checksum	sha256:428d558507a00cdbffb0997681c53f7d82ba740c3f6c21489fda5ef5ded8c55d
Downloads	0

Version	Date	Status	Downloads	Size	Diff
0.0.0-0b45cc0	29 Apr 2026 21:15:27 (UTC)		0	2.3 KB	↔
0.0.0-0c7146d	08 Apr 2026 18:37:55 (UTC)		1	2.4 KB	-