Nextflow Registry | nf-core/fastawindows@0.0.0-0c7146d

nf-core/fastawindows @ 0.0.0-0c7146d

Quickly compute statistics over a fasta file in windows.

genome fasta tsv bed

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @muffato

Maintainers: @muffato

Quickly compute statistics over a fasta file in windows.

Add the following snippet to your workflow script to include this module.

include { FASTAWINDOWS } from 'nf-core/fastawindows'

MIT License

Process

`Name`	`FASTAWINDOWS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	FASTA file `*.{fa,fasta,fna}`

Output 6 channels

#1 freq tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fw_out/*_freq_windows.tsv` file	TSV file with frequencies and statistics `*.{tsv}`

#2 dinuc tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fw_out/*_dinuc_windows.tsv` file	TSV file with dinucleotide counts `*.{tsv}`

#3 trinuc tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fw_out/*_trinuc_windows.tsv` file	TSV file with trinucleotide counts `*.{tsv}`

#4 mononuc tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fw_out/*_mononuc_windows.tsv` file	TSV file with mononucleotide counts `*.{tsv}`

#5 tetranuc tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fw_out/*_tetranuc_windows.tsv` file	TSV file with tetranucleotide counts `*.{tsv}`

#6 versions_fasta_windows tuple

`${task.process}` string	The name of the process
`fasta_windows` string	The name of the tool
`fasta_windows --version \| cut -d" " -f3` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
fastawindows	fasta_windows is a tool written for Darwin Tree of Life chromosomal level genome assemblies. The executable takes a fasta formatted file and calculates some statistics of interest in windows	https://github.com/tolkit/fasta_windows

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:37:52 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffastawindows/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fastawindows/blobs/sha256:03b3e2cc0d766c51afba48046c18764e10f7bef777d2d522145b24ec6fddf973
Size	2.6 KB
Checksum	sha256:03b3e2cc0d766c51afba48046c18764e10f7bef777d2d522145b24ec6fddf973
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:37:52 (UTC)		1	2.6 KB	-