nf-core/fairy/sketch @ 0.0.0-91d94af
Summary
Sketches FASTQ reads into binary sketch (.bcsp) files for alignment-free coverage estimation.
Get started
Add the following snippet to your workflow script to include this module.
include { FAIRY_SKETCH } from 'nf-core/fairy/sketch'
License
MIT License
Process
Name
|
FAIRY_SKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
|---|---|
reads
file
|
List of input FASTQ files. For paired-end data provide two files [R1, R2]; for single-end or long reads provide a single file [reads]. *.{fastq,fastq.gz,fq,fq.gz}
|
Output
2 channels
#1
sketch
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
|---|---|
${prefix}/*.bcsp
file
|
Binary sketch file(s) produced by fairy sketch, used as input for fairy coverage estimation. *.bcsp
|
#2
versions_fairy
tuple
${task.process}
string
|
The name of the process |
|---|---|
fairy
string
|
The name of the tool |
fairy --version 2>&1 | sed 's/fairy //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fairy | Alignment-free tool for rapidly computing coverage of contigs/genomes from short or long reads using sketching. | https://github.com/bluenote-1577/fairy |
| Version | 0.0.0-91d94af |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 16 Apr 2026 21:15:23 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffairy%2Fsketch/0.0.0-91d94af/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fairy/sketch/blobs/sha256:0acb903ecd9a1cc377d4c5eba6325671804a42d0b6323d96fa2d282b25ab159e |
| Size | 2.5 KB |
| Checksum | sha256:0acb903ecd9a1cc377d4c5eba6325671804a42d0b6323d96fa2d282b25ab159e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-91d94af | 16 Apr 2026 21:15:23 (UTC) | 1 | 2.5 KB | - |