nf-core/fairy/coverage @ 0.0.0-5d4a8ab
Summary
Computes coverage depth statistics for assembled contigs from one or more fairy sketch files, producing a MetaBAT2-compatible TSV with per-contig mean depth and variance columns.
Get started
Add the following snippet to your workflow script to include this module.
include { FAIRY_COVERAGE } from 'nf-core/fairy/coverage'
License
MIT License
Process
Name
|
FAIRY_COVERAGE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
sketches
file
|
One or more fairy sketch files (.bcsp) produced by *.bcsp
|
contigs
file
|
Assembled contigs in FASTA format *.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}
|
Output
2 channels
#1
coverage
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.tsv
file
|
MetaBAT2-compatible TSV file with per-contig coverage statistics. Columns: contigName, contigLen, totalAvgDepth, and per-sample mean depth and variance. *.tsv
|
#2
versions_fairy
tuple
${task.process}
string
|
The name of the process |
|---|---|
fairy
string
|
The name of the tool |
fairy --version 2>&1 | sed 's/fairy //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fairy | fairy is a fast, alignment-free, k-mer-based tool for computing coverage depth statistics for metagenomic samples. It is orders of magnitude faster than alignment-based approaches and produces output directly compatible with MetaBAT2. | https://github.com/bluenote-1577/fairy |
| Version | 0.0.0-5d4a8ab |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 20 Apr 2026 21:15:30 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffairy%2Fcoverage/0.0.0-5d4a8ab/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fairy/coverage/blobs/sha256:3290981bb036f0bbe733db933b7d85001497e8624e746c5e2342473a2f45fdf9 |
| Size | 2.7 KB |
| Checksum | sha256:3290981bb036f0bbe733db933b7d85001497e8624e746c5e2342473a2f45fdf9 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-5d4a8ab | 20 Apr 2026 21:15:30 (UTC) | 1 | 2.7 KB | - |