nf-core/epang/split @ 0.0.0-0c7146d
Summary
splits an alignment into reference and query parts
Get started
Add the following snippet to your workflow script to include this module.
include { EPANG_SPLIT } from 'nf-core/epang/split'
License
MIT License
Process
Name
|
EPANG_SPLIT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
refaln
file
|
reference alignment in any supported format including phylip and fasta, may be gzipped *.{faa,fna,fa,fasta,fa,phy,aln,alnfaa,alnfna,alnfa,mfa,faa.gz,fna.gz,fa.gz,fasta.gz,fa.gz,phy.gz,aln.gz,alnfaa.gz,alnfna.gz,alnfa.gz,mfa.gz}
|
fullaln
file
|
full alignment in any supported format to split into reference and query alignments *.{faa,fna,fa,fasta,fa,phy,aln,alnfaa,alnfna,alnfa,mfa,faa.gz,fna.gz,fa.gz,fasta.gz,fa.gz,phy.gz,aln.gz,alnfaa.gz,alnfna.gz,alnfa.gz,mfa.gz}
|
Output
3 channels
#1
query
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*query.fasta.gz
file
|
query sequence alignment in gzipped fasta format |
#2
reference
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*reference.fasta.gz
file
|
reference sequence alignment in gzipped fasta format |
#3
versions_epang
tuple
${task.process}
string
|
The name of the process |
|---|---|
epa-ng
string
|
The name of the tool |
epa-ng --version | sed "s/EPA-ng v//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| epang | Massively parallel phylogenetic placement of genetic sequences | https://github.com/Pbdas/epa-ng |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:37:24 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fepang%2Fsplit/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/epang/split/blobs/sha256:390931c4612efca017de834dbb42ddc1d38811a6b023f951f7c37af7eec61548 |
| Size | 2.5 KB |
| Checksum | sha256:390931c4612efca017de834dbb42ddc1d38811a6b023f951f7c37af7eec61548 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:37:24 (UTC) | 1 | 2.5 KB | - |