Nextflow Registry | nf-core/endorspy@0.0.0-0c7146d

nf-core/endorspy @ 0.0.0-0c7146d

endorS.py calculates endogenous DNA from samtools flagstat files and print to screen

endogenous DNA ancient DNA percent on target statistics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @aidaanva

Maintainers: @aidaanva

endorS.py calculates endogenous DNA from samtools flagstat files and print to screen

Add the following snippet to your workflow script to include this module.

include { ENDORSPY } from 'nf-core/endorspy'

MIT License

Process

`Name`	`ENDORSPY`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`stats_raw` file	output of samtools flagstat in a txt file, assumes no quality filtering nor duplicate removal performed
`stats_qualityfiltered` file	output of samtools flagstat in a txt file, assumes some form of quality or length filtering has been performed, must be provided with at least one of the options -r or -d
`stats_deduplicated` file	output of samtools flagstat in a txt file, whereby duplicate removal has been performed on the input reads

Output 2 channels

#1 json tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_mqc.json` file	file with the endogenous DNA calculation tailored for multiQC `*_mqc.json`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
endorspy	endorS.py calculates percent on target and/or clonality from samtools flagstat files and print to screen	https://github.com/aidaanva/endorS.py

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:37:09 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fendorspy/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/endorspy/blobs/sha256:aa3dc1343688c657f4de889d297e3582069a743fd2058e422afa40eed36495a6
Size	3.2 KB
Checksum	sha256:aa3dc1343688c657f4de889d297e3582069a743fd2058e422afa40eed36495a6
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:37:09 (UTC)		1	3.2 KB	-