nf-core/emmtyper @ 0.0.0-0b45cc0
Summary
EMM typing of Streptococcus pyogenes assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { EMMTYPER } from 'nf-core/emmtyper'
License
MIT License
Process
Name
|
EMMTYPER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA assembly file *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Tab-delimited result file *.tsv
|
#2
versions_emmtyper
tuple
${task.process}
string
|
The name of the process |
|---|---|
emmtyper
string
|
The name of the tool |
python -c "import emmtyper; print(emmtyper.__version__)"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| emmtyper | Streptococcus pyogenes in silico EMM typer | https://github.com/MDU-PHL/emmtyper |
| Version | 0.0.0-0b45cc0 |
|---|---|
| Commit ID | 0b45cc097cafcd4768e2f79b504333fee85940bc |
| Release Date | 29 Apr 2026 21:15:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Femmtyper/0.0.0-0b45cc0/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/emmtyper/blobs/sha256:70ff59c3c059843654c0145fd0564c319e7084b12b1ad9e9b17e10956f882238 |
| Size | 2.1 KB |
| Checksum | sha256:70ff59c3c059843654c0145fd0564c319e7084b12b1ad9e9b17e10956f882238 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0b45cc0 | 29 Apr 2026 21:15:25 (UTC) | 0 | 2.1 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:37:05 (UTC) | 1 | 2.0 KB | - |